Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDTLFNESLNKRFCFDEKVAHVFDDMLERSIPYYHEMLNLGAYFIAQNLKENVYHKSLPKPLIYDLGCSTGNFFIALNQQIQQDIELVGIDNSMPMLKKAQEKLKDFN---NVRFECMDFLEVK--FKEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIELYYLYKQNQGYSHNEIAFKREALENVLVPYSLKENIALLESVGFKHVEALFKWVNFTLLVARKT
3DLC Chain:A ((43-213))
-----------------------------------------------------------TAGTCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDV--ATAFREIYRILKSGGKTYIGGGFGNKELR--DSISAEMIRKN--PDW--------KEFNRKNISQENVERFQNVLDEIGISSYEIILGDEGFWIIISKTD
General information:
TITO was launched using:
RESULT:
Template:
3DLC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133221 for 1277 contacts (-104.3/contact) +
2D Compatibility (PS) -17844 + (NN) -3683 + (LL) 5868
1D Compatibility (HY) -4400 + (ID) 1350
Total energy: -154630.0 ( -121.09 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_3DLC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DLC-query.scw
PDB file :
Tito_Scwrl_3DLC.pdb
: