Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRSPNLEKEETEIIETLLVREKMRLCPLYWRILAF--LIDSLLVAFLLSDLLRACAFLHSLYWLTNPIYYSAFVVMGFIILYGVYEIFFVCL-------CKMSLAKLVFRIKIIDIYLADCPSRAILLK--------RLGLKIVVFLCPFLWFVVFKNPYHRAWHEEKSKSLLVLF---
1OQV Chain:A ((22-192))
------DSQNMTKAAQSLNSIQVALTQTYRGLGNYPATADATAASKLTSGLVSLGKI--SSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQCKTLITSVGDMFPYIAIKAGGAVALADLGDFENSAAAAETGVGVIKSIAPASKNLDLTNITHVEKLCKGTAPFGVAFGNS
General information:
TITO was launched using:
RESULT:
Template:
1OQV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -197611 for 1129 contacts (-175.0/contact) +
2D Compatibility (PS) -15659 + (NN) -1890 + (LL) 456
1D Compatibility (HY) 6400 + (ID) 1200
Total energy: -209504.0 ( -185.57 by residue)
QMean score : 0.342
(partial model without unconserved sides chains):
PDB file :
Tito_1OQV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OQV-query.scw
PDB file :
Tito_Scwrl_1OQV.pdb
: