Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVSQYLYQN--AQSIWGDCISHPFVQGIGRGTLERDKFRFYIIQDYLFLLEYAKVFALGVVKACDEAVMREFSNAIQDILNNEMSIHNHYIR-ELQITQKE-LQNACPTLANKSYTSYMLAEGFKGSIKEVAVAVLACGWSYLVIAQNLSQIPNALEDAFYGHWIKGYSSKEFQACVTWNINLLDSLALASSKQEIEKLKEIFIATSEYEYQFWDMAYQS
3RM5 Chain:A ((331-548))
-NFYEYLINHPKVKPHWDSYINHEFVKKVADGTLERKKFQFFIEQDYAYLVDYARVHCIAGSKAPCLEDMEKELVIV-GGVRTEMGQHEKRLKEVFGVKDPDYFQKIKRGPALRAYSRYFNDVSRRGNWQELVASLTPCLMGYGEALTKMKGKVTAPEGSVYHEWCETYASSWYREAMDEGEKLLNHILETYPPEQLDTLVTIYAEVCELETNFWTAALEY
General information:
TITO was launched using:
RESULT:
Template:
3RM5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149255 for 1657 contacts (-90.1/contact) +
2D Compatibility (PS) -22159 + (NN) -7084 + (LL) 328
1D Compatibility (HY) -11200 + (ID) 2600
Total energy: -191970.0 ( -115.85 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_3RM5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RM5-query.scw
PDB file :
Tito_Scwrl_3RM5.pdb
: