Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIFSKLIGLFSHDIAIDLGTANTIVLVKGQ-GIIINEPSIVAVRMGLFD---SKAYDILAVGSEAKEMLGKTPNSIRAIRPMKDGVIADYDITAKMIRYFIEKAHKRKTWIRPRIMVCVPYGLTSVERNAVKES-ALSAGAREVFLIEEPMAAAIGAGLPV---KEPQGSLIVDIGGGTTEIGVISLGGLVIS--KSIRVAGDKLDQSIVEYIRKKFNL---LIGERTGEEIKIEIGCAIKLDPPL--TM---------EVSGRDQVSGLLHTIELSSDDV---FEAIKDQ------VREISSALRSVLEEVKPDLVRDIVQNGVVLTGGGALIKGLDKYLSDMVKLP--------------------VYVGDEPLLAVAKGTGEAIQDLDLLSRVGFSE |
| 1K8K Chain:A ((3-390)) | --------GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKE----VMKGVDDLDFFIGDEAIEK-----PTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRA-EPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYK-NIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1K8K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -162035 for 2521 contacts (-64.3/contact) +
2D Compatibility (PS) -34059 + (NN) -7794 + (LL) 812
1D Compatibility (HY) -8800 + (ID) 2800
Total energy: -214676.0 ( -85.16 by residue)
QMean score : 0.428
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