Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPNLENLDWKNLGFSYIKTDFRFIATYKNG-SWSQGELVSENALQLSEGSPVLHYGQACFEGLKAYRSQKGKALLFRPLENAKRLQTSCERLLMPKVSEELFLKACAEVIKANQKWLAPYKSGASLYLRPFVIGVGDNLGVKPASEYLFIVFCAPVGAYFKGGIEKGGARFITTAFDRAAPKGTGGVKVGGNYAASLLAHKIATEQGYDDCIYLDPTTHTKIEEVGAANFF--GITHD---DAFITPHSPSILPSVTRKSLMVLAKEHLKLKVEEREILIDEL------GAFKEAGACGTAAIITPIKEIAHNNKSY---SFEAPGNITKQLYDLLLSIQQGEQEAPKDWIFEVG |
| 2COG Chain:B ((40-381)) | ----EKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWV-PYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYF----FNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDH-QITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREE--RDWTIVL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2COG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -148650 for 2583 contacts (-57.5/contact) +
2D Compatibility (PS) -34811 + (NN) -15444 + (LL) 492
1D Compatibility (HY) -23600 + (ID) 5550
Total energy: -227563.0 ( -88.10 by residue)
QMean score : 0.496
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