Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSRKKGIILVLSVILIFSIGLLVNNLMTNNKDTAKPKKKTVAAVKKKKETPPKPKEPFNIDFTGDIMFDWDLRPVLAEK-GMDYPFNNVREELKSSDYTFVDLETAITTRTKKVPYQEFW-IK--SDPSSLTALKNAGVDMVNISNNHILDYYEDGLLDTTAALRANNLAYVGAGKNEDE---A-----YQLKVA--DIKGNKVGFMSFCHFFPNTGWIADEDTPGVTNGYDLNLVEE-KIKEERAKNKDIDYMVVYFHWGVEKTNTPVDYQTQYVKKLVDDNLVDAIVASHPHWLQGFEVYKDVPIAYSLGNFLFPDYVSGHSAETGIYKLNFDQGKVTAHFDPGIISGNQINMLEGSSKTAQLNYLQSISPNATINSNGDISAK |
| 3C9F Chain:A ((9-271)) | ---------------------------------------------------RNLTWNDINFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAH-SRNQDLLLIDSGDRHDGNGLSDITSPNGLKSTPIFIKQDYDLLTIG-NHELYLWENSKQEYETVVNHFQDKYVCSNVDIRLDNGLFVPLGLKYKYFTTPIRGIRVMAFGFLFDFK--RF-----NSGTRVTPMAETIHEPWFQEAL--KHEVDLIIIVGHTPISHNWGEFYQVHQYLRQFFPDT-IIQYFGGHSHIRDFTVFDSLSTGLQS---------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C9F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -61139 for 1885 contacts (-32.4/contact) +
2D Compatibility (PS) -24074 + (NN) -503 + (LL) 7708
1D Compatibility (HY) -5200 + (ID) 1550
Total energy: -84758.0 ( -44.96 by residue)
QMean score : 0.254
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