Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------MKIDLEQIYILDFTMGLRFHPLIIRKNLPLLYVAFIFLIWIQGVVMA----GLPGDFDTTELDVLLAAIPAL-------PLLILYP------------KKMAMKFQNVQYLLYVCFN-
1MSP Chain:A ((3-126))
SVPPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATEDLNNDRITIEWTNTPDGAAKQFRREWFQGDGMVRRKNLPIEYNL
General information:
TITO was launched using:
RESULT:
Template:
1MSP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103050 for 573 contacts (-179.8/contact) +
2D Compatibility (PS) -10096 + (NN) 3709 + (LL) 0
1D Compatibility (HY) 3600 + (ID) 450
Total energy: -106287.0 ( -185.49 by residue)
QMean score : 0.162
(partial model without unconserved sides chains):
PDB file :
Tito_1MSP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MSP-query.scw
PDB file :
Tito_Scwrl_1MSP.pdb
: