Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKNFKKLKSLHELPTPLILYNCWDVASARAIQQGGAPVIATSSYAIAESLGAVDGEHLTFDEMFSVISRIAENVSLPLTVDIETGYARNLEELAQNVERLLAIGVCGVNLEDQLIGVTN--PGLCSTEEQCDKIKTIKETAAKMSTEIFINARTDVFFQGRDEAVDLVEEAISRANAYKEAGADAIFIPG-LLSPNLIRAFVEKSP--LPVNVMRM-DGMLSNEDLQKIGVKRISYGPFSFFQANLAIQQEVERIFEGGKAL
1S2W Chain:A ((4-261))
KVKKTTQLKQMLNSKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQL---------WTQVVEVLEFMSDASDVPILLDADTGYGN-FNNARRLVRKLEDRGVAGACLEDKLF---GRAQPLADIEEFALKIKACKDSQT--DPDFCIVARVEAFIAGW-----GLDEALKRAEAYRNAGADAILMHSKKADPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVSMVIWANHNLRASVSAIQQTTKQIYDDQS--
General information:
TITO was launched using:
RESULT:
Template:
1S2W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118056 for 1951 contacts (-60.5/contact) +
2D Compatibility (PS) -26034 + (NN) -12258 + (LL) 1164
1D Compatibility (HY) -10400 + (ID) 3150
Total energy: -168734.0 ( -86.49 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_1S2W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S2W-query.scw
PDB file :
Tito_Scwrl_1S2W.pdb
: