Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------------------------------------------------------------------------------------------------------VTIKITRKTGIGSGITPVKIRIENEEIVKLDNHQSHFFMPKMEKTKVCVTDWFYGSQEAVLENSNDVVVRINRKALLLNYSMFPFLFYGFVMTSLFATLIALGLCLVSFFY--SRKHWFEFVKIK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| 5A1F Chain:A ((1-458)) | SMFLPPPECPVFEPSWEEFADPFAFIHKIRPIAEQTGICKVRPPPDWQPPFACDVDKLHFTPRIQRLNELEAQTRVRDYTLRTFGEMADAFKSDYFNMPVHMVPTELVEKEFWRLVSTIEEDVTVEYGADIASKEFGSGFPVRDSPEEEEYLDSGWNLNNMPVMEQS--------------VLAHITADICGMK----------LPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPGYAAEQLENVMKKLAPELFVSQPDLLHQLVTIMNPNTLMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQCVEHYRLLHRYCVFSHDEMICKMASKADVLDVVVASTVQKDMAIMIEDEKALRETVRKLGVIDSERMDFELLPDDERQCVKCKTTCFMSAISCSCKPGLLVCLHHVKELCSCPPYKYKLRYRYTLDDLYPMMNALKLRAE |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 5A1F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -19462 for 493 contacts (-39.5/contact) +
2D Compatibility (PS) -10628 + (NN) 989 + (LL) 2056
1D Compatibility (HY) -7200 + (ID) 950
Total energy: -35195.0 ( -71.39 by residue)
QMean score : 0.042
|
|
|