Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYELVFLAAGQGKRMNAQKNKMWLELVGEPIFIHALRPFLAD-NRCSKVIVVCQEEERKHVKELMSQLNVAEHRIEIVKGGSERQYSVAAGLERCG-TGRVVLVHDGARPFITLDIIDRLLIG-VEQSKAAICAVKVKDTVKRVMNGV-VQETVDRENLWQVQTPQAFELPILRKAHQLARKEQFLGTDEASLVERIPCPVAIVQGSYYNIKLTTPEDMPLAKAILGELGGIAND
2YC3 Chain:A ((3-226))
KSVSVILLAGGQG-------PKQYIPLLGQPIALYSFFTFSRMPE-VKEIVVVCDPFFRDIFEEYEESI---DVDLSFAIPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGS-AVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSE-------
General information:
TITO was launched using:
RESULT:
Template:
2YC3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163363 for 1666 contacts (-98.1/contact) +
2D Compatibility (PS) -23055 + (NN) -6315 + (LL) 1104
1D Compatibility (HY) -17600 + (ID) 3750
Total energy: -212979.0 ( -127.84 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_2YC3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YC3-query.scw
PDB file :
Tito_Scwrl_2YC3.pdb
: