Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQENEQEWIGGRNPVLEVLRSDRDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ-KIEKVVSG-AHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGTDAKGSSDYRTM---DVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMR----GKVTSLNASVAASLLLYEVYRKRFPLEK
2I6D Chain:A ((22-257))
-RLREQAFAVEGPKLVGEMLPFYRCR-MLVGTAAM-L----RAV--STPHDAEVVELPESFDFKRISTQTTPQPLMAVFD-LPAEPE-PV--------VEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQ-SLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSV---ESLNVAIATAILCSEWRRRS-----
General information:
TITO was launched using:
RESULT:
Template:
2I6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118675 for 1809 contacts (-65.6/contact) +
2D Compatibility (PS) -23905 + (NN) -3465 + (LL) 2120
1D Compatibility (HY) -10400 + (ID) 2500
Total energy: -156825.0 ( -86.69 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_2I6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2I6D-query.scw
PDB file :
Tito_Scwrl_2I6D.pdb
: