Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIAIAADHGGFQLKEKIRAHLIESG--YTVKDFGCYSLESVDFPEYAAKVGHFVA-TENSLGVLCCGTGIGMSMAANKIKGVRAAVVSDAFSAMMTRRHNNSNVLCLGERVLGDSLALLLLDTWLVAEFEG-GRHNTRLQKLAELEEREEDK
3M1P Chain:B ((5-149))
--VAIGTDHPAFAIHENLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRVAEMVARKEVEFGVLAAGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVGERTTGVEVIREIIITFLQTPFSGEERHVRRIEKIRAIE------
General information:
TITO was launched using:
RESULT:
Template:
3M1P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112414 for 1204 contacts (-93.4/contact) +
2D Compatibility (PS) -15343 + (NN) -8633 + (LL) 712
1D Compatibility (HY) -10400 + (ID) 2900
Total energy: -148978.0 ( -123.74 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_3M1P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M1P-query.scw
PDB file :
Tito_Scwrl_3M1P.pdb
: