Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVIIDYDTGNTKSISKALDFIGLQNKIS--S--DATEISQADGVILPGVGAYPEAMKELTRRGLNKTLKEIAAGGKPILGVCLGMQLLLESSNEHSFTNGLGLIPGHVEKLPEDPEFAVPHMGWNQLQIKRATPLTKQLDGEYVYYVHSYYANCPEEYIIATSGYSIEVPGMIN-KGNIYGAQFHPEKSGQIGLEILKGFKEVTYSCKSSQQ
1GPW Chain:B ((2-200))
RIGIISVGPGNIMNLYRGVKRASENFEDVSIELVESPRNDLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRS---RRLPHMGWNEVIFK---DT---FPNGYYYFVHTYRAVCEEEHVLGTTEYDGEIFPSAVRKGRILGFQFHPEKSSKIGRKLLEKVIECSLSR-----
General information:
TITO was launched using:
RESULT:
Template:
1GPW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102839 for 1632 contacts (-63.0/contact) +
2D Compatibility (PS) -21192 + (NN) -9889 + (LL) 668
1D Compatibility (HY) -14800 + (ID) 3450
Total energy: -151502.0 ( -92.83 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_1GPW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GPW-query.scw
PDB file :
Tito_Scwrl_1GPW.pdb
: