Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPEKLDTVLGYLKEFPDYYKYV--TKKTYTLNEKIIFEDEKAKSIFFIVEGYAAVEL-EDNLRKTNYISIFVLPYNVLGIDAFSSYPKKKHSITVMSESLMLYKIDADFLLNILSIKPDVNDFLLTSIADVFARHYALLGM-IAKTPKERIYMALENLAVEMGTEDEERNEIVLPNFINQSVLARYCRTTQPNISNLLTELVEEEFLINK-KSPYRIDKDSLDI
1ZYB Chain:A ((38-232))
------------------LDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKE--NIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDLKSKIIRFFLSHCEKPQ------G--EKTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILIPDAQKLL-
General information:
TITO was launched using:
RESULT:
Template:
1ZYB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96058 for 1277 contacts (-75.2/contact) +
2D Compatibility (PS) -20138 + (NN) -2062 + (LL) 2204
1D Compatibility (HY) -3200 + (ID) 1450
Total energy: -120704.0 ( -94.52 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_1ZYB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZYB-query.scw
PDB file :
Tito_Scwrl_1ZYB.pdb
: