Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEELEVIHKGLANAKNGFKAVPGKLYLTATYIVHKPNDY-FDEEINIPLNRVAKIRGVRTKILGKELLSNILEIDMISGVKYQFVV---NKQKKWLEAVSEVLESRGESEKLG
1PLS Chain:A ((25-103))
------------------------WVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDF----GKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCI-------
General information:
TITO was launched using:
RESULT:
Template:
1PLS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46606 for 483 contacts (-96.5/contact) +
2D Compatibility (PS) -8349 + (NN) -4101 + (LL) 1896
1D Compatibility (HY) 400 + (ID) 400
Total energy: -57160.0 ( -118.34 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_1PLS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PLS-query.scw
PDB file :
Tito_Scwrl_1PLS.pdb
: