Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNKLEFTTIDEYITQAPPET-KEVLQKIRETIKAAAPEATEKISYQMPTFYLEG-NLVHFAVAKNHYGFYPASSGIAAFES-KL-GNYKHSKGAVQFPIKEEVPYELIKEMTLFRLAENKQ--KAAEKLAKKKKK
2OC6 Chain:A ((2-124))
------MDVFSEYLAGIADPFHRERTEEVLTWIKNKYPNLHTEIKWNQPMFTDHGTFIIGFSVSKKHLAVAPEKVTIAHVEDDIVKAGYDYTEQLIRIPWNGPVDYTLLEKMIEFNILDKADCSTFWRK-------
General information:
TITO was launched using:
RESULT:
Template:
2OC6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49570 for 799 contacts (-62.0/contact) +
2D Compatibility (PS) -12980 + (NN) -5160 + (LL) 1036
1D Compatibility (HY) -8800 + (ID) 1300
Total energy: -76774.0 ( -96.09 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_2OC6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OC6-query.scw
PDB file :
Tito_Scwrl_2OC6.pdb
: