Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VGYYSPQEVTEITIEKGTQKA-------NSSTLTLVLLGFLGGAFISLGYLLYIRAVGTMPHEWGSFATLIGASL-FPVGLVCILLGGGELITGNMMAVAIAWYDKKISFQQLLRNWAIVSVMNLVGAFFVAYFFGHFVGLTEGDFLPKTLA-TAGAKINDPFWVAFVSGIGCNWFVGIAVWLCYAAKDFAGKILGIWFPVMAFVAIGFQHVVANMFIIPAAIFAGYYSWADF---IWNVIPVYLGNVVGGAVFVSL-FYFLAYKKNAPKKVKEEIHQPIEEN
3TE2 Chain:D ((8-259))
------------TLDKLTNAAINSINLLNTSKVKYLVSSAFAGLYVGIGILL-IFTIGGLLTDAGSPMTKIVMGLSFAIALSLVIMTGTELFTGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVG-TGLVDKGPVAEFFANTAASKASMPFTALFFRGILCNILVCVSVLCSFRTNSDTAKIIMIFLCLFAFITSGFEHSVANMTIYSVSLFSPTISTVTIGGAIYNLVAVTLGNIVGGALFMGLGTYILGKEK-----------------
General information:
TITO was launched using:
RESULT:
Template:
3TE2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -258557 for 2096 contacts (-123.4/contact) +
2D Compatibility (PS) -24509 + (NN) -7270 + (LL) 2112
1D Compatibility (HY) -26000 + (ID) 4050
Total energy: -318274.0 ( -151.85 by residue)
QMean score : 0.272
(partial model without unconserved sides chains):
PDB file :
Tito_3TE2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TE2-query.scw
PDB file :
Tito_Scwrl_3TE2.pdb
: