Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKMMVMGSVGCGKTTLCQKLHGYDILYKKTQA-----VEY---FQEMIDTPGEFVQH-----RQLYSALTVTAADASVIAILQSVTEKKQTFSPMFAS---IFAKPVIGIVTKVDLAESDKDIERAERELRMAGAKHIFYISSVEETGIEELRAYLED
1MKY Chain:A ((2-178))
-ATVLIVGRPNVGKSTLFNKLVK---------DPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLDTMLETII-
General information:
TITO was launched using:
RESULT:
Template:
1MKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67084 for 966 contacts (-69.4/contact) +
2D Compatibility (PS) -14265 + (NN) -3538 + (LL) 876
1D Compatibility (HY) -2400 + (ID) 1050
Total energy: -87461.0 ( -90.54 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_1MKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MKY-query.scw
PDB file :
Tito_Scwrl_1MKY.pdb
: