Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYVIGIGPGDKRLMTGEALQAIEDAEVIVGYVTYIKLIKELIKDKEVVKTGMRREIDRCQEAVDIALTGKKVAVVSSGDAGIYGMAGLVLELAEK----SNPDLEVKVIPGITASIGAAAVLGAPIMHDFCHISLSDLMTPWEVIEKRLTHAAMADFVVCFYNPRSKGRANHLANAFQKMMEHKSGDTVVGIVKDVGRKEERKIITTMQGIDYELVDMTTVVIVGNKETYVKNGKMITPRGYSL
3NUT Chain:A ((10-247))
WVTVAGLGPGREDLVTPEVTAALAEATDIVGYIPYVARIAPR-EGLTLHPTDNRVELDRATHALEMAAEGRRVVVVSSGDPGVFAMASALFEALEAHPEHA--GTEIRILPGITAMLAAAAAAGAPLGHDFCAINLSDNLKPFEILEKRLRHAARGDFAMAFYNPRSKSRPHQFTRVLEILREECEPGRLILFARAVTTPEQAISVVELRDATPEMADMRTVVLVGNAATRRVGPWVYTPR----
General information:
TITO was launched using:
RESULT:
Template:
3NUT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -202719 for 1875 contacts (-108.1/contact) +
2D Compatibility (PS) -26487 + (NN) -16718 + (LL) 52
1D Compatibility (HY) -13600 + (ID) 4550
Total energy: -264022.0 ( -140.81 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_3NUT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NUT-query.scw
PDB file :
Tito_Scwrl_3NUT.pdb
: