Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLGNDWDELLKNEFNQPYYLTLRQFLKKEYQTKKVFPDMYDIFNALKHTAYKDVKVVILGQDPYHGPGQAHGLSFSVQQGVQIPPSLQNIYLELHNDLNCEI-PNNGYLIPWADQGVLLLNTVLTVRAGQANSHRGQGWEILTNHIIEIINQKEEPVVFLLWGSNAKEKLQLLTNPKHTAFTSVHPSPLSASRGFMGCKHFSKTNQFLEQNGVKPIDWQIPSI
1SSP Chain:E ((4-221))
---FGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWK----
General information:
TITO was launched using:
RESULT:
Template:
1SSP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97861 for 1834 contacts (-53.4/contact) +
2D Compatibility (PS) -23016 + (NN) -9092 + (LL) 716
1D Compatibility (HY) -19200 + (ID) 5600
Total energy: -154053.0 ( -84.00 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_1SSP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SSP-query.scw
PDB file :
Tito_Scwrl_1SSP.pdb
: