Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKATRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKS-AIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALLDYHNLLDATDEEIEHRFFTTGSTQIFKDIAKDWLNMPDMTVEHIKLGK
2JFQ Chain:B ((21-284))
MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSNEHASYTEHPDHRFFATGDTTHITNIIKEWLNL-SVNVERISV--
General information:
TITO was launched using:
RESULT:
Template:
2JFQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -224501 for 2413 contacts (-93.0/contact) +
2D Compatibility (PS) -28131 + (NN) -7838 + (LL) -248
1D Compatibility (HY) -28800 + (ID) 6700
Total energy: -296218.0 ( -122.76 by residue)
QMean score : 0.627
(partial model without unconserved sides chains):
PDB file :
Tito_2JFQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFQ-query.scw
PDB file :
Tito_Scwrl_2JFQ.pdb
: