Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKGHRHIIIRELITSNEIDTQEDLVELLLERDVKVTQATVSRDIKELHLVKVPTQTGG-YKYSLPADNSFNP-----HQKLKRALIDCFIGIDNVQFMIILKVMPGNGNSVGALIDNLDWPEKAGTICGDDTCLIICRSEENAKTLTDRFIDML
3LAP Chain:A ((16-169))
ANRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVVPE------GVSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFENL-
General information:
TITO was launched using:
RESULT:
Template:
3LAP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96005 for 1004 contacts (-95.6/contact) +
2D Compatibility (PS) -15477 + (NN) -8433 + (LL) -96
1D Compatibility (HY) -6400 + (ID) 2200
Total energy: -128611.0 ( -128.10 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_3LAP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LAP-query.scw
PDB file :
Tito_Scwrl_3LAP.pdb
: