Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VAVEKITMPKLGESVTEGTISSWLVKPGDTVEKYDAIAEVLTDKVTAEIPSSFSGTIKEILAEEDETLEVGEVICTIETEEASSSEPVVEAEQTEPKTPEKQETKQVKLAEAPASGRFSPAVLRIAGENNIDLSTVEGTGKGGRITRKDLLQVIENGPVAPKREEVKSAPQEKEATPNPVRSAAGDREIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNTVKD-SFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTW--AGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDM-IAVRDMVNLCLSIDHRILDGLLAGKFLQAIKAKVEKISKENTALY |
| 2II5 Chain:B ((31-252)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DRTEPVKGFHKAMVKTMSAA-LKIPHFGYCDEVDLTELVKLREELKPIAFAR--GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLE---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2II5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -144754 for 1657 contacts (-87.4/contact) +
2D Compatibility (PS) -24710 + (NN) -14208 + (LL) 12788
1D Compatibility (HY) -14000 + (ID) 3900
Total energy: -188784.0 ( -113.93 by residue)
QMean score : 0.470
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