Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHKVGILGGTFDPPHLAHLHMAEEAKKQLELEKILFLPNKIPPHKHISGMASINERVEMLQLMIEGIDSFEIDTRELMRTGKSYTYDTMRDMIIEQPDTDFYFIIGGDMVEYLPKWYHIDDLVKMVTFVGVNRPLYQPEVPYDVVKIDMPKTTISSTEIR---NDIEHAEAFLPEKVWSYIKEHQLYGKK
3MMX Chain:D ((5-189))
---KIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIP------NITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLY---
General information:
TITO was launched using:
RESULT:
Template:
3MMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137776 for 1333 contacts (-103.4/contact) +
2D Compatibility (PS) -19277 + (NN) -9726 + (LL) 460
1D Compatibility (HY) -18800 + (ID) 4350
Total energy: -189469.0 ( -142.14 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_3MMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MMX-query.scw
PDB file :
Tito_Scwrl_3MMX.pdb
: