Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKVSIIGATGYGGLELIRLLHQHSSVDIATLHSFSAQAETLATFYPHLKDLAVSPLEKINPTEIIEKSDTVFIATPSGIAKDIALPYVDAGLNVIDLSGDFRLKDRQLYEKWYGKSAAPTEYIGKAEYGLAEFRE--KKETTFIANPGCYATATLLGLAPLATNKLIDPTSIIVDAKSGISGAGKVPSASTHFTETNENMTLYKMNSHQHIPEIMQQLTKWDESIPAIQFSTSLIPITRGIFTTIYVKPKNPITQKELHKLYESTYDNAPFVRIQPENVYPTVKQVTASNYCDIGL-AYNEKTNVITIVSVIDNLVKGAAGQAIQNLNIMANFAESDGLRFIPVYP |
| 1VKN Chain:A ((2-339)) | IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLE--NSILSEFDPEKVSKNCDVLFTALPAGASYDLVREL--KGVKIIDLGADFRFDDPGVYREWYGKELSGYENI-KRVYGLPELHREEIKNAQVVGNPGCYPTSVILALAPALKHNLVDPETILVDAKSGVSGAGRKEKVDYLFSEVNESLRPYNVAKHRHVPEMEQELGKISGKKVNVVFTPHLVPMTRGILSTIYVKTDK--SLEEIHEAYLEFYKNEPFVHVLPMGIYPSTKWCYGSNHVFIGMQMEER-TNTLILMSAIDNLVKGASGQAVQNMNIMFGLDETKGLEFTPIYP |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VKN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -89401 for 2808 contacts (-31.8/contact) +
2D Compatibility (PS) -34650 + (NN) -11035 + (LL) 392
1D Compatibility (HY) -7200 + (ID) 4350
Total energy: -146244.0 ( -52.08 by residue)
QMean score : 0.321
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