Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIYFDNSATTKPNAAVLETYTKVASNYFANPSSLHRFGAKSKELLDASRKQIAAMMSALPEEIIFTSGGTEGNNLAIKGLVYSYQ----NRG---KHIITSSIEHPSVRVVMEEL-EQEGFTVKYLPVDK-NGVIKLEELKAALTDETILVSIMGVNNEVGSIQPLQEIGEMLSVLEN---------TFFHVDFVQAIGKIPLTLDANSIDLLTFSGHKFHALRGTGILFKR---KNVHLHPEILGGGQEMGYRSGTENLAGNVALAKALRLTLENEPRKEA-LIEIRDYLLTKI-AQMSDMTVHTKQSVAA----PHIVCFSAKGHRGEILVHALEKEDIYISTTSACSSKQKLASSTLKAMGVTDEEATGAVRVSLSYENRLSEAKIFIQKLQEIIENLNKVVK |
| 3GZD Chain:B ((27-436)) | -VYMDYNATTPLEPEVIQAMTKAMWEAWGNPSSPYSAGRKAKDIINAARESLAKMIGGKPQDIIFTSGGTESNNLVIHSVVKHFHANQTS--GAKPHFITSSVEHDSIRLPLEHLVEEQVAAVTFVPVSKVSGQTEVDDILAAVRPTTRLVTIMLANNETGIVMPVPEISQRIKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPR-IGALYIRGLGEFTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTQNCEAYEAHMRDVRDYLEERLEAEFGQKRIHLNSQFPGTQRLPNTCNFSIRGPRLQGHVVLAQCRVLMASVG--------QPSPVLLSYGVPFDVARNALRLSVGRSTTRAEVDLVVQDLKQAVAQL----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3GZD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -151273 for 3204 contacts (-47.2/contact) +
2D Compatibility (PS) -40148 + (NN) -21932 + (LL) 760
1D Compatibility (HY) -18400 + (ID) 6350
Total energy: -237343.0 ( -74.08 by residue)
QMean score : 0.506
|
|
|