Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILLIDNYDSFTFNLEQYLAEF-SEVVVKRNDAADLIKIAA-LADGIVLSPGPGKPSDAGLLEEVVAK-FAKEKPLLGICLGHQAIGEVFGGEVKRAAKIRHGKVSTMRQTAGAIFANLPEEMPVMRYHSLIVDKNTLPDVLEVLAIATDDSEVMAMKVKDYPVYGLQFHPESIGTNDGKQMMENFIHIVEGARENGNLTTKSI
2YWB Chain:A ((1-221))
MVLVLDFGSQYTRLIARRLRELRAFSLILPGDA-PLEEVLKHRPQALILSGGPRSVFDPDA-PRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERA---EYGK-ALLTRHEGPLFRGLEGEVQVWMSHQDAVT--APPPGWRVVAETE-ENPVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFLELAGVK-RDWTP-----
General information:
TITO was launched using:
RESULT:
Template:
2YWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114285 for 1612 contacts (-70.9/contact) +
2D Compatibility (PS) -19288 + (NN) -1210 + (LL) 1276
1D Compatibility (HY) -9200 + (ID) 2800
Total energy: -145507.0 ( -90.26 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_2YWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWB-query.scw
PDB file :
Tito_Scwrl_2YWB.pdb
: