Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTNELVYEGKAKRLFKTEEAGVLRVAYKDDATALNGVRKESFAGKGELNNQITSLIFSHLAEAGIESHFIRAISETEQLVKEVSIIPLEVVVRNVMAGSLAKRLGKEEGEQIPNAIVEFYYKDDALDDPFINDDHVLYLEVATTSEMDTIRQAARSINKVLQELFNQMNITLIDFKLEFGRDAAGEILLADEISPDTCRLWDKETNQKLDKDVFRRNIGNLTDVYTEVLNRLKQVQN
2GQS Chain:A ((7-232))
-----LYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNYFIMSKLAEAGIPTQMERLLSDTECLVKKLDMVPVECVVRNRAAGSLVKRLGIEEGIELNPPLFDLFLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKANDVLKKLFDDAGLILVDFKLEFGL-YKGEVVLGDEFSPDGSRLWDKETLEKMDKDRFRQSLGGLIEAYEAVARRL-----
General information:
TITO was launched using:
RESULT:
Template:
2GQS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80848 for 1796 contacts (-45.0/contact) +
2D Compatibility (PS) -23484 + (NN) -2019 + (LL) 784
1D Compatibility (HY) -21200 + (ID) 4800
Total energy: -131567.0 ( -73.26 by residue)
QMean score : 0.378
(partial model without unconserved sides chains):
PDB file :
Tito_2GQS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GQS-query.scw
PDB file :
Tito_Scwrl_2GQS.pdb
: