Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKQVVVMDEAAIKRALTRVSYEIIERNKGTKNLALVGIKTRGIYLAERLHKRILEIEGIDVPVGDIDITLYRDDLSFKDDKTREPAVHGTNIPFDINGKKVVLVDDVLYTGRTVRAAMDALMDVGRPAQIHLAVLADRGHRELPIRADYVGKNIPTSGNERVEVRLTDVDHAEDAVIINKNE
4P83 Chain:C ((5-181))
---KAVIMDEQAIRRALTRIAHEIIERNK--DGCVLVGIKTRGIYLARRLAERIEQIEGAPVPVGEIDITLYRD--------D-EPLVKGTNVPFPVTERNVILVDDVLFTGRTVRAGMDAVMDLGRPARIQLAVLVDRGHRELPIRADFVGKNVPTSRSELIVVELDEVDQ-NDQVSIHEN-
General information:
TITO was launched using:
RESULT:
Template:
4P83.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121956 for 1314 contacts (-92.8/contact) +
2D Compatibility (PS) -18443 + (NN) -6915 + (LL) 800
1D Compatibility (HY) -20000 + (ID) 5650
Total energy: -172164.0 ( -131.02 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_4P83.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P83-query.scw
PDB file :
Tito_Scwrl_4P83.pdb
: