Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKIVLLLALITVVLTVGACSDNKKETEEKANKTEEESATFLTTISTKDFK-QKMADKTTGFVYVGRPTCEDCQAFQPILKKELKKRQPDQKMAYYNTDKASEKSRDNMIALLEKMDIDSVPTMVYLKDGKVASTYAATDEPAKLTNWMNKVSGEVSE
1T00 Chain:A ((5-109))
-----------------------------------------LKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENP--------GTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFIA----
General information:
TITO was launched using:
RESULT:
Template:
1T00.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35870 for 791 contacts (-45.3/contact) +
2D Compatibility (PS) -11267 + (NN) -7121 + (LL) 4700
1D Compatibility (HY) -6400 + (ID) 900
Total energy: -56858.0 ( -71.88 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_1T00.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T00-query.scw
PDB file :
Tito_Scwrl_1T00.pdb
: