Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNIVLVCAAGM-STSLLVTKMRKAAEERGET-CEIEAYSIAEVSNLIDDADVVLLGPQVRYQKKTVDELAAGKIPVDVIDMAAYGTMNGEKVLGQALDLINGFQK
1VKR Chain:A ((378-470))
-RKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNL---PPDVDLVITHRDLTERAM---RQV-PQAQHISLTNFLDS-GLYTSLTERLVAAQR----
General information:
TITO was launched using:
RESULT:
Template:
1VKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60001 for 659 contacts (-91.0/contact) +
2D Compatibility (PS) -10062 + (NN) -2549 + (LL) 784
1D Compatibility (HY) -400 + (ID) 650
Total energy: -72878.0 ( -110.59 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_1VKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VKR-query.scw
PDB file :
Tito_Scwrl_1VKR.pdb
: