Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLPKDLLYTEEHEWVKADDGSYVIGITDFAQDQLGDIVFVELPEVGDTVTKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLEEVEEADVKALLSSDDYEKVLD
3WDN Chain:A ((2-121))
-----VRKFTEKHEWVTTENGVGTVGISNFAQEALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSNPSELDELMSEEAYEKYIK
General information:
TITO was launched using:
RESULT:
Template:
3WDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43646 for 944 contacts (-46.2/contact) +
2D Compatibility (PS) -12856 + (NN) -3953 + (LL) 280
1D Compatibility (HY) -11600 + (ID) 2300
Total energy: -74075.0 ( -78.47 by residue)
QMean score : 0.688
(partial model without unconserved sides chains):
PDB file :
Tito_3WDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WDN-query.scw
PDB file :
Tito_Scwrl_3WDN.pdb
: