Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------MGNG--VQPLDPVAIQI---GSISVKWYGVI-------------IASAVV------IALLLALSEANKRKMDKEIIVDLLIWAIPISIISARIYYVIFEWDFYKN------------------------------NLGEIVKIWHGGIAIYGALIG---------AVLTAIIFSRIKKISFWQLADV--VAPSLIIAQ-------AIGRWGN-----------FMNQEAHGAETTR------SFLESLHLPD-------------FIINQMYIDGAYYQPTFLYESLWNVLGFVILLIIRRTKIRR----------------GELFL-----GYVIWYSFGRFFIEGMRTDSLMWGDFRVSQALSLLLIVLSIGIIIYRRLKMNPPYYMEDKFGKVVKKK |
| 4NM6 Chain:A ((7-451)) | SCRCEGPFYTHLGAGPNVAAIREIMEERFGQKGKAIRIERVIYTGKEGKSSQGCPIAKWVVRRSSSEEKLLCLVRERAGHTCEAAVIVILILVWEGIPLSLADKLYSELTETLRKYGTLTNRRCALNEERTCACQGLDPETCGASFSFGCSWSMYYNGCKFARSKIPRKFKLLGDDPKEEEKLESHLQNLSTLMAPTYKKLAPDAYNNQIEYEHRAPECRLGLKEGRPFSGVTACLDFCAHAHRDLHNMQNGSTLVCTLTREDNREFGGKPEDEQLHVLPLYKVSDVDEFGSVEAQEEKKRSGAIQVLSSFRRKVRMLAEPVKTGSDEVWSDSEQSFLDPDIGGVAVAPTHGSILIECAKRELHATTPLKNPNRNHPT----RISLVFYQHKSMNEPKHGLALWEAKMAEK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NM6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -198434 for 1937 contacts (-102.4/contact) +
2D Compatibility (PS) -28756 + (NN) -1427 + (LL) 748
1D Compatibility (HY) -6800 + (ID) 2500
Total energy: -237169.0 ( -122.44 by residue)
QMean score : 0.223
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