Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
4TYP Chain:B ((1-212))
MNIVLMGLPGAGKGTQAEKIVAKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVRERLS------GFLLDGFPRTVAQAEALEEILEEMGRKLEHVIHIDVRQEELMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVAKRLEVNMKQMKPLLAFYDSKEVLRNVNGEQDMEKVFKDLRELL---
General information:
TITO was launched using:
RESULT:
Template:
4TYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55600 for 1585 contacts (-35.1/contact) +
2D Compatibility (PS) -22841 + (NN) -15696 + (LL) 332
1D Compatibility (HY) -24000 + (ID) 7050
Total energy: -124855.0 ( -78.77 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_4TYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TYP-query.scw
PDB file :
Tito_Scwrl_4TYP.pdb
: