Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VIRFFKIVTPILLSISLVACSSASGKTEKITAPIEKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDLTNNGEK-----TSHEELAKKLTQVEKNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYGDFGYEDAISSDEFSLSYLAAPSSKVWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLDWIKESSALAKK-NGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGAMDFSLSGHIHTQNIRSAKSTDGKEITDIVTNALSVFPHKYGNITYSAKNKNFTYQSQKLDMEAWAKAQGSTDENLLNFDQFDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTMGLNNMYFFAGTAPPKSDGMALWDSAPNSFLKDYVLSSSNPPKKSNDYYVSP |
| 2QFP Chain:A ((117-324)) | ------------------------------------DVPYTFGLIGDLGQSFDSN-----------------------TTLSHY--ELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSV-AYQPWIWTAGNHEIEFAPEIN--E----------TEPFKPFSYRYHVPYEASQSTSPFWYSIKR-ASAHIIVLSSYSAY------------GRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFM-EGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSER--------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2QFP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -68325 for 1548 contacts (-44.1/contact) +
2D Compatibility (PS) -21296 + (NN) -2851 + (LL) 11632
1D Compatibility (HY) -5600 + (ID) 1400
Total energy: -87840.0 ( -56.74 by residue)
QMean score : 0.383
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