Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLVQFLKKGMVW-VQSDIEKQEDLFQMVAESGKSEGYVTDDFLTRLTDR-EQTFPTG-LKLDGYGVALPHTDPE-CVTEQFIAVITVKDGIPFKLMEDAGQTVEANLIFVLGLNEPHSQL-AVLQQLMGTIQDKDNVAALLRAKDEDEVKQILETIAV
3BJV Chain:A ((1-148))
MNLAQAFKENHSIRLGLTAKDWKEAVKLSVTPLIESGAVKPEYYNAIIESTESYGPYYIL---MPGMAMPHARPEAGVQRDAFSLVTLTEPVTFTDG------KEVQVLLALAATSSKIHTSVAIPQIIALFELDHSIERLVNCKTPEEVLAMVEES--
General information:
TITO was launched using:
RESULT:
Template:
3BJV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107727 for 1110 contacts (-97.1/contact) +
2D Compatibility (PS) -15411 + (NN) -9880 + (LL) 672
1D Compatibility (HY) -6000 + (ID) 1300
Total energy: -139646.0 ( -125.81 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_3BJV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BJV-query.scw
PDB file :
Tito_Scwrl_3BJV.pdb
: