Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVSKVAIASDHGGIELRKSIISYLESVGISYEEF-----GPETPESVDYPRLAITVSEKVVNQEVDRGILVCGTGIGMSIAANKVKGIRCALVGDTFSAHATREHNDTNVLALGARVIGPGLAEDIVKIWLETEYEG-GRHANRVGQITAYEDSHA
3M1P Chain:B ((4-153))
----RVAIGTDHPAFAIHENLILYVKEAG---DEFVPVYCGPKTAESVDYPDFASRVAEMVARKEVEFGVLAAGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVGERTTGVEVIREIIITFLQTPFSGEERHVRRIEKIRAIEASHA
General information:
TITO was launched using:
RESULT:
Template:
3M1P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105443 for 1189 contacts (-88.7/contact) +
2D Compatibility (PS) -15222 + (NN) -3145 + (LL) 692
1D Compatibility (HY) -11200 + (ID) 3300
Total energy: -137618.0 ( -115.74 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_3M1P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M1P-query.scw
PDB file :
Tito_Scwrl_3M1P.pdb
: