Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKPYGVVIISHSKDVAKGVHDIIKEIAPDVSITHAGGTEDGRIGTSFDAVNEAIEN-----NEANKVYTFYDLGSAKMNIETVEEISEKEIILFNAPILEGAYATAAQVQMDEKPEVIAANLKTIEIK
3GX1 Chain:A ((2-122))
-NAQVEVIVMMHGRSTATSMVETVQELLSIESGIALD----MPLTVEVKAMYEKLKQTVVKLNPVKGVLILSDMGSLTSFGNILTEELGIRTKTVTMVSTPVVLEAMRKASLGRGLEDIYQSCEQL---
General information:
TITO was launched using:
RESULT:
Template:
3GX1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44726 for 917 contacts (-48.8/contact) +
2D Compatibility (PS) -12691 + (NN) -6517 + (LL) 488
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -67396.0 ( -73.50 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_3GX1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GX1-query.scw
PDB file :
Tito_Scwrl_3GX1.pdb
: