Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKNNISFYVVDASEELTMNIKEASEKSGVSADTIRYYERIGLIPPIHRN-ENGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVERSNS
1R8E Chain:A ((3-113))
---------------ESYYSIGEVSKLANVSIKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQDLEM------EELFAFYTEQERQIREKLDFLSALEQTISLVKKRMK--------------------
General information:
TITO was launched using:
RESULT:
Template:
1R8E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29885 for 636 contacts (-47.0/contact) +
2D Compatibility (PS) -12564 + (NN) -9322 + (LL) 2684
1D Compatibility (HY) -6000 + (ID) 1000
Total energy: -56087.0 ( -88.19 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_1R8E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R8E-query.scw
PDB file :
Tito_Scwrl_1R8E.pdb
: