Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNELEDKILAILEQHQVGVLTSVQG-DYPHARYMTFLHD-GLTLYTPSGKELPKTDEVRRNPHVSVLIGYESP----GS--AFLEINGLASLEEDE-SIKERIWENISKEWFRG----EDSPSFVVIKIVPEQIRILNSDDDGPDTLDLIG
1VL7 Chain:A ((23-156))
--------YAGFIQEFQSAIISTISEQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVDDEAKTNQIFARRRLSFDCTATLIERESQKWNQVVDQFQERFGQIIEVLRGLADFRIFQLTPKEGRFVIGFG----------
General information:
TITO was launched using:
RESULT:
Template:
1VL7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52352 for 827 contacts (-63.3/contact) +
2D Compatibility (PS) -13679 + (NN) -7656 + (LL) 496
1D Compatibility (HY) -6800 + (ID) 1000
Total energy: -80991.0 ( -97.93 by residue)
QMean score : 0.383
(partial model without unconserved sides chains):
PDB file :
Tito_1VL7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VL7-query.scw
PDB file :
Tito_Scwrl_1VL7.pdb
: