Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKILLVCAAGMSTSLLVT-KMKAHATSIGEE-IEIEALPVSEASNVVDKMDIVMLGPQVRYQKPQVDELVQGRIPVIVIDMKDYGMLNGKAVLEKAFAEIG
1VKR Chain:A ((378-468))
-RKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNL---PPDVDLVITHRDLTERAM---RQVP-QAQHISLTNFLDS-GLYTSLTERLVAA--
General information:
TITO was launched using:
RESULT:
Template:
1VKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68580 for 644 contacts (-106.5/contact) +
2D Compatibility (PS) -9674 + (NN) -2614 + (LL) 596
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -82622.0 ( -128.30 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_1VKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VKR-query.scw
PDB file :
Tito_Scwrl_1VKR.pdb
: