Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LTTETETIKPQLAELKANLTKRNLQYVMEVEKHLRETHYGEEQQEIIVYEMSEKILAEQKKGITARKLFNLTPTEYVVSLDVKAATVEQNTDKWWLVLDGGLLVLGAMMLISGISAYFQKNAQTLGIIVLLITAVVGGFAMLILRKYASNMRAGQKGGTIKYLLVAVGVIAVWMFVMTIVQVTIPPNINVALSPIVNTVGGAIIIALRFYVKKKKNIPSL |
4PKY Chain:B ((2-50)) | --------EFEVLALQASLRKAQMQ-NHSLEMTLEQKTKEIDELTRICDDLISKMEKI------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PKY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 4613 for 190 contacts (24.3/contact) +
2D Compatibility (PS) -5465 + (NN) -3422 + (LL) 15124
1D Compatibility (HY) -1600 + (ID) 450
Total energy: 8800.0 ( 46.32 by residue)
QMean score : 0.393
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