Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVLTFLLCSLYFVSIPAISTEEPLTLSQNRRYALTQTVVDKEMYFDAIPERPTTKIEISSFQDEALTITGETLVPNTLLSIVSLTINSNGIPVFTLSNGQFIKASREAIFNDLVSKQQSVSLDYWLKPSFVTYEAPYTNGVSEVKNNLKPYSRVHLVEQAETEHGIYYKTDSGFWISVEDLSVADNRMAKVQEVLLEKYNKDKYGIYIKQLNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSGKLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVNNQYDSMFQTQVDTISG-----M--------HW-DMKKRQISPQAAGKMMEAIYYQN-------GDIVNYLSKTDFDNTRIPKNIP--VKVAHKIGDA-YDYKHDAAIVYA--EQPFIMIIFTDKSS------YDDITKIADDVYQVLK |
| 3W4P Chain:A ((5-266)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAERQLRELEST--FDGRLGFVALDTATGARIAHRGDERFPFCSTSKMMLCAAVLARSAGEPALLQRRIAYAKGDL-------IRYSPITEQ-HVGAGMSVAELCAATLQYSDNTAANLLIALLGGP--QTVTAYARSIGDATFRLDRREPELNTALPGDERDTTTPAAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTANDIGVAYPPNRAPIVFIVYTTMRNPNAQARDDVIASATRIAARAFA |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3W4P.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -82614 for 1960 contacts (-42.1/contact) +
2D Compatibility (PS) -24542 + (NN) -8493 + (LL) 13724
1D Compatibility (HY) -3600 + (ID) 2000
Total energy: -107525.0 ( -54.86 by residue)
QMean score : 0.418
|
|
|