Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRTVAIDIGGTMIKHGIVDNLGCIVEASELATEAYKGGPGILQKVCQIIDNYLT-EGSIDGIAISSAGMVDPDEGCIFYSGPQIPNYAGTQFKKVLEDTYQVRTEIENDVNCAGLAEAVSGSAKDSSIALCLTIGTGIGGCLIIDKTVFHGFSNSACEVGYMHLSD--------------------GDFQDLASTTALIADVAKAHGDEISRWDGRRIFQEAKEGNEKCIASIDRMINYLGQGIANMVYVVNPEKVVLGGGIMAQKDYLQDKLSESLKRNLVTSLAEKTAIVFAQHENQAGMLGAYYHFKNRG |
| 2AP1 Chain:A ((24-326)) | -AMYYGFDIGGTKIALGVFDSTRRLQWEKRVPTPHT-SYSAFLDAVCELVEEADQRFGVKGSVGIGIPGMPETEDGTLYAA-N-VPAASGKPLRADLSARLDRDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLVLNGKPITGQSYITGEFGHMRLPVDALTLMGFDFPLRRCGCGQMGCIENYLSGRGFAWLYQHYYD---QSLQAPEIIALWEQGDEQAHAHVERYLDLLAVCLGNILTIVDPDLLVIGGGLSNF-TAITTQLAERLPRHLLP-VARAPRIERARHGDAGGMRGAAFLHLTD- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2AP1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -196595 for 2431 contacts (-80.9/contact) +
2D Compatibility (PS) -29750 + (NN) -6856 + (LL) 588
1D Compatibility (HY) -14800 + (ID) 3400
Total energy: -250813.0 ( -103.17 by residue)
QMean score : 0.507
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