Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKGILGKKVGMTQIFTESGEFIPVTVIEATPNVVLQVKTVETDGYEAVQVGFDDKREVLSNKPAKGHVAKANTAPKRFIREFKNIE--GLEVGAELSVEQFEAGDVVDVTGTSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKNKRLAGRMGGNRVTVQNLEIVQVIPEKNVVLIKGNVPGAKKSLITIKSAVKAAK
3J3W Chain:D ((3-208))
--KGILGRKIGMTQVFAENGDLIPVTVIEAAPNVVLQKKTAENDGYEAIQLGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGVEMDAYEVGQEVKVEIFSAGEIVDVTGVSKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMGPVDPNRVFKGKLLPGRMGGEQITVQNLEIVKVDAERNLLLIKGNVPGAKKSLITVKSAVKS--
General information:
TITO was launched using:
RESULT:
Template:
3J3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26617 for 1302 contacts (-20.4/contact) +
2D Compatibility (PS) -21567 + (NN) -4871 + (LL) 468
1D Compatibility (HY) -20800 + (ID) 7750
Total energy: -81137.0 ( -62.32 by residue)
QMean score : 0.346
(partial model without unconserved sides chains):
PDB file :
Tito_3J3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J3W-query.scw
PDB file :
Tito_Scwrl_3J3W.pdb
: