Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKEAILNFLQAKGEPTWLQELRLKAFEKIEELELPVIERVKFHRWNLGDGTILENDYTANIPDFTELGNNPKLVQIGTQTVLEQVPMELIEKGVVFTDFYSALEEIPEVIERYFGKARPFEEDRLAAYHTAYFNSGAVLYIPDNVEITQPIEGLFYQDNQSKVPFNKHILLIVGKNAKVSYLERFESIGDGTERTSANISVEVIAQAGSQIKFASIDRLGENVTTFISRRGRH-SSDATIDWALGVMNEGNVVAD--FDSDLIGDGSHANL--KVVAASSGRQVQGIDTRVTNYGCNSVGHILQHGVILER-GTLTFNGIGHIIKGAKGADAQQESRVLMLSDKARSDANPILLIDENDVTAGHAASIGQVDPEDLYYLMSRGLNQKTAEQLVIRGFLGTVIAEIPVKEVRDEMIAVIDTKLEKR |
| 1VH4 Chain:A ((172-352)) | ----------------------------------------------------------------------------------------------------------------------------------------RHHLDLAEGAEAT--VIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFEN----PLSHHFAHNDLLLAEDATAFSHSFLLGG-A-VLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQQVLARIGQRLPGG-------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VH4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -61138 for 1393 contacts (-43.9/contact) +
2D Compatibility (PS) -19241 + (NN) -4327 + (LL) 12592
1D Compatibility (HY) 2000 + (ID) 1100
Total energy: -71214.0 ( -51.12 by residue)
QMean score : 0.331
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