Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKELVKFIYSSSEG---QLKALQSKANALTGEVTISDDVSDIADAWKKRLGLKTVQTALARKLAYASARHHYKDGKTM----LEDISAGKTRRHANSYI
2LQO Chain:A ((1-88))
MVTAALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTV------------PTVKFADGSTLTNPSADEVKAKLVKIAGLEHH
General information:
TITO was launched using:
RESULT:
Template:
2LQO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 12543 for 507 contacts (24.7/contact) +
2D Compatibility (PS) -8836 + (NN) -5237 + (LL) 1328
1D Compatibility (HY) 0 + (ID) 750
Total energy: -952.0 ( -1.88 by residue)
QMean score : 0.241
(partial model without unconserved sides chains):
PDB file :
Tito_2LQO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LQO-query.scw
PDB file :
Tito_Scwrl_2LQO.pdb
: