Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKRIKPNKKRELLKAKGINWKDVRLSQTLQEVASPKKKAPEAPKAVDLLEGLTANKQDVLKEAGLVSLEAFAKVSEADVLALKGIGPAAIKQLVDNGVVFAK
2NRT Chain:A ((169-216))
---------------------------------------------VLDNVPGIGPIRKKKLIEH-FGSLENIRSASLEEIARVIG-STEIARRVLDIL-----
General information:
TITO was launched using:
RESULT:
Template:
2NRT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26720 for 300 contacts (-89.1/contact) +
2D Compatibility (PS) -5242 + (NN) -1575 + (LL) 3252
1D Compatibility (HY) -2000 + (ID) 450
Total energy: -32735.0 ( -109.12 by residue)
QMean score : 0.756
(partial model without unconserved sides chains):
PDB file :
Tito_2NRT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NRT-query.scw
PDB file :
Tito_Scwrl_2NRT.pdb
: