Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTITTFENKKVLVLGLARSGE-AAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVS-ESQLIGITGSNGKTTTTTMIAEVLNAGGQR-GLLAGNIGFPASEVVQAADDKDILVMELSSFQLMGVKEFRPHIAVITNLMPTHLDYHG-SFEDYVAAKWNIQNQMSSSDFLVLNFNQGISKELAKTTKATIVPFSTTEKVDGAYVQD-------KQLFY--KGENIMLVDDIGVPGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLGK----VHGISFYNDSKSTNILATQKALSGFDN----TKVILIAGGLDRGNE----FDELIPDITGLKHMVV-----------LGESASRVKRAAQKAG-VTYSDALDVRDAVHKAYEVAQQGDVILLSPANASWDMYKNFEVRGDEFIDTFESLRGE |
| 1P3D Chain:A ((17-468)) | -------RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVV----TQRLAQAGAKIYIG-HAEEHIEGASVVVVSSAIKDDNPELVTSKQKRIPVIQRAQMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAH-LGASRYLIAEADESDAS-FLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQ-ADYRIEDYEQTGFQGHYTVICPNNERIN-VLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD-YGHHPTEVGVTIKAAREGWGDKRIVMIFQPH-RYSRTRDLFDDFVQVLSQVDALIMLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGSVSKISRGLAESW------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1P3D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -188826 for 3701 contacts (-51.0/contact) +
2D Compatibility (PS) -45262 + (NN) -19156 + (LL) 1968
1D Compatibility (HY) -14000 + (ID) 4200
Total energy: -269476.0 ( -72.81 by residue)
QMean score : 0.492
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