Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTFKRYDEEFKQSLVNLYQTGKTQSELCKDYGVSTSTLAKWIKQYSQFKLEDN-----------SVLTAKQIQELQKHNAQLEEENLILKKASAIFMQNLK-------
2LVS Chain:A ((1-105))
----MPSVNDSLDIVEKLYKDGVPVKEIAKRSNNSMSTVYKALEKLEAMGRIKRRKGRYRQHRRLTEEELATIRELYLKGATVYEIARQLGRPESTIYYALKKLGLKLE
General information:
TITO was launched using:
RESULT:
Template:
2LVS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13065 for 519 contacts (-25.2/contact) +
2D Compatibility (PS) -9333 + (NN) -5591 + (LL) 364
1D Compatibility (HY) -800 + (ID) 850
Total energy: -29275.0 ( -56.41 by residue)
QMean score : 0.690
(partial model without unconserved sides chains):
PDB file :
Tito_2LVS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVS-query.scw
PDB file :
Tito_Scwrl_2LVS.pdb
: